PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0570.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 179aa    MW: 19210.7 Da    PI: 10.1739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20858256
                     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  SapurV1A.0012s0570.1.p  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58
                            69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.721865IPR001471AP2/ERF domain
SMARTSM003807.4E-36871IPR001471AP2/ERF domain
PfamPF008473.2E-13857IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-32865IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-22865IPR016177DNA-binding domain
CDDcd000184.76E-30865No hitNo description
PRINTSPR003675.2E-11920IPR001471AP2/ERF domain
PRINTSPR003675.2E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA  60
KTNFPSPPST SGLSLDLNLP SDPHHSHHNL RWSSSPHVGS HRFGGFGEFL QTGVVLKEMN  120
FNATEAAAAS GSVVKIEGPG VGAVAAPPVP ENVAPVSFLG MVRRGLPIDL NEPPPLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-21865563ATERF1
2gcc_A1e-21865563ATERF1
1gcc_A1e-21865260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305780.11e-117ERF domain protein 12
SwissprotQ94ID62e-53ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLB9H2R81e-117B9H2R8_POPTR; ERF domain protein 12
STRINGPOPTR_0004s04700.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.17e-49ERF domain protein 12